Index

_

__all__ (in module ngff_zarr) _align_chunks() (in module ngff_zarr.methods._support) _array_split() (in module ngff_zarr._array_split) _compute_itk_gaussian_kernel_radius() (in module ngff_zarr.methods._itk) _compute_next_scale() (in module ngff_zarr.methods._dask_image) _compute_next_translation() (in module ngff_zarr.methods._dask_image) _compute_sigma() (in module ngff_zarr.methods._support) _dim_scale_factors() (in module ngff_zarr.methods._support) _downsample_dask_image() (in module ngff_zarr.methods._dask_image) _downsample_itk_bin_shrink() (in module ngff_zarr.methods._itk) _downsample_itk_gaussian() (in module ngff_zarr.methods._itk) _downsample_itkwasm() (in module ngff_zarr.methods._itkwasm) _downsample_itkwasm_bin_shrink() (in module ngff_zarr.methods._itkwasm) _dtype_to_component_type() (in module ngff_zarr.ngff_image_to_itk_image) _finish() (ngff_zarr.rich_dask_progress.NgffProgressCallback method) _get_block() (in module ngff_zarr.methods._support)

_get_truncate() (in module ngff_zarr.methods._dask_image) _image_dims (in module ngff_zarr.methods._itk) (in module ngff_zarr.methods._itkwasm) _itk_blur_and_downsample() (in module ngff_zarr.methods._itk) _itkwasm_blur_and_downsample() (in module ngff_zarr.methods._itkwasm) _itkwasm_chunk_bin_shrink() (in module ngff_zarr.methods._itkwasm) _large_image_serialization() (in module ngff_zarr.to_multiscales) _multiscales_to_ngff_zarr() (in module ngff_zarr.cli) _ngff_image_scale_factors() (in module ngff_zarr.to_multiscales) _ngff_image_to_multiscales() (in module ngff_zarr.cli) _pop_metadata_optionals() (in module ngff_zarr.to_ngff_zarr) _posttask() (ngff_zarr.rich_dask_progress.NgffProgressCallback method) _prep_for_to_zarr() (in module ngff_zarr.to_ngff_zarr) _pretask() (ngff_zarr.rich_dask_progress.NgffProgressCallback method) _spatial_dims (in module ngff_zarr.methods._support) _start() (ngff_zarr.rich_dask_progress.NgffProgressCallback method) _start_state() (ngff_zarr.rich_dask_progress.NgffProgressCallback method)

A

add_cache_task() (ngff_zarr.rich_dask_progress.NgffProgress method) add_callback_task() (ngff_zarr.rich_dask_progress.NgffProgressCallback method) add_multiscales_task() (ngff_zarr.rich_dask_progress.NgffProgress method)

axes (ngff_zarr.zarr_metadata.Metadata attribute) axes_units (ngff_zarr.ngff_image.NgffImage attribute) AxesType (in module ngff_zarr.zarr_metadata) Axis (class in ngff_zarr.zarr_metadata)

C

cache_store (ngff_zarr.config.NgffZarrConfig attribute) chunks (ngff_zarr.multiscales.Multiscales attribute) cli_input_to_ngff_image() (in module ngff_zarr.cli_input_to_ngff_image) computed_callbacks (ngff_zarr.ngff_image.NgffImage attribute) ComputedCallback (in module ngff_zarr.ngff_image)

config (in module ngff_zarr.config) conversion_backends (in module ngff_zarr.detect_cli_io_backend) conversion_backends_values (in module ngff_zarr.detect_cli_io_backend) ConversionBackend (in module ngff_zarr.detect_cli_io_backend) coordinateTransformations (ngff_zarr.zarr_metadata.Dataset attribute) (ngff_zarr.zarr_metadata.Metadata attribute)

D

data (ngff_zarr.ngff_image.NgffImage attribute) Dataset (class in ngff_zarr.zarr_metadata) datasets (ngff_zarr.zarr_metadata.Metadata attribute)

default_store_factory() (in module ngff_zarr.config) detect_cli_io_backend() (in module ngff_zarr.detect_cli_io_backend) dims (ngff_zarr.ngff_image.NgffImage attribute)

F

from_ngff_zarr() (in module ngff_zarr.from_ngff_zarr)

I

Identity (class in ngff_zarr.zarr_metadata) images (ngff_zarr.multiscales.Multiscales attribute)

is_dimension_supported() (in module ngff_zarr.zarr_metadata) is_unit_supported() (in module ngff_zarr.zarr_metadata) itk_image_to_ngff_image() (in module ngff_zarr.itk_image_to_ngff_image)

M

main() (in module ngff_zarr.cli) memory_target (ngff_zarr.config.NgffZarrConfig attribute) memory_usage() (in module ngff_zarr.memory_usage) Metadata (class in ngff_zarr.zarr_metadata) metadata (ngff_zarr.multiscales.Multiscales attribute) method (ngff_zarr.multiscales.Multiscales attribute) Methods (in module ngff_zarr.methods) methods (in module ngff_zarr.methods) methods_values (in module ngff_zarr.methods) module ngff_zarr ngff_zarr._array_split ngff_zarr.cli ngff_zarr.cli_input_to_ngff_image ngff_zarr.config ngff_zarr.detect_cli_io_backend ngff_zarr.from_ngff_zarr ngff_zarr.itk_image_to_ngff_image ngff_zarr.memory_usage ngff_zarr.methods ngff_zarr.methods._dask_image ngff_zarr.methods._itk ngff_zarr.methods._itkwasm ngff_zarr.methods._support ngff_zarr.multiscales ngff_zarr.ngff_image ngff_zarr.ngff_image_to_itk_image ngff_zarr.rich_dask_progress ngff_zarr.task_count ngff_zarr.to_multiscales ngff_zarr.to_ngff_image ngff_zarr.to_ngff_zarr ngff_zarr.zarr_metadata

Multiscales (class in ngff_zarr.multiscales)

N

name (ngff_zarr.ngff_image.NgffImage attribute) (ngff_zarr.zarr_metadata.Axis attribute) (ngff_zarr.zarr_metadata.Metadata attribute) ngff_image_to_itk_image() (in module ngff_zarr.ngff_image_to_itk_image) ngff_zarr module ngff_zarr._array_split module ngff_zarr.cli module ngff_zarr.cli_input_to_ngff_image module ngff_zarr.config module ngff_zarr.detect_cli_io_backend module ngff_zarr.from_ngff_zarr module ngff_zarr.itk_image_to_ngff_image module ngff_zarr.memory_usage module ngff_zarr.methods module ngff_zarr.methods._dask_image module ngff_zarr.methods._itk module

ngff_zarr.methods._itkwasm module ngff_zarr.methods._support module ngff_zarr.multiscales module ngff_zarr.ngff_image module ngff_zarr.ngff_image_to_itk_image module ngff_zarr.rich_dask_progress module ngff_zarr.task_count module ngff_zarr.to_multiscales module ngff_zarr.to_ngff_image module ngff_zarr.to_ngff_zarr module ngff_zarr.zarr_metadata module NgffImage (class in ngff_zarr.ngff_image) NgffProgress (class in ngff_zarr.rich_dask_progress) NgffProgressCallback (class in ngff_zarr.rich_dask_progress) NgffZarrConfig (class in ngff_zarr.config)

P

path (ngff_zarr.zarr_metadata.Dataset attribute)

S

Scale (class in ngff_zarr.zarr_metadata) scale (ngff_zarr.ngff_image.NgffImage attribute) (ngff_zarr.zarr_metadata.Scale attribute) scale_factors (ngff_zarr.multiscales.Multiscales attribute)

space_units (in module ngff_zarr.zarr_metadata) SpaceUnits (in module ngff_zarr.zarr_metadata) SpatialDims (in module ngff_zarr.zarr_metadata) supported_dims (in module ngff_zarr.zarr_metadata) SupportedDims (in module ngff_zarr.zarr_metadata)

T

task_count() (in module ngff_zarr.task_count) task_target (ngff_zarr.config.NgffZarrConfig attribute) time_units (in module ngff_zarr.zarr_metadata) TimeUnits (in module ngff_zarr.zarr_metadata) to_multiscales() (in module ngff_zarr.to_multiscales) to_ngff_image() (in module ngff_zarr.to_ngff_image) to_ngff_zarr() (in module ngff_zarr.to_ngff_zarr)

Transform (in module ngff_zarr.zarr_metadata) Translation (class in ngff_zarr.zarr_metadata) translation (ngff_zarr.ngff_image.NgffImage attribute) (ngff_zarr.zarr_metadata.Translation attribute) type (ngff_zarr.zarr_metadata.Axis attribute) (ngff_zarr.zarr_metadata.Identity attribute) (ngff_zarr.zarr_metadata.Scale attribute) (ngff_zarr.zarr_metadata.Translation attribute)

U

unit (ngff_zarr.zarr_metadata.Axis attribute) Units (in module ngff_zarr.zarr_metadata)

update_cache_task_completed() (ngff_zarr.rich_dask_progress.NgffProgress method) update_multiscales_task_completed() (ngff_zarr.rich_dask_progress.NgffProgress method)

V

version (ngff_zarr.zarr_metadata.Metadata attribute)