ngff-zarr¶

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A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Features¶

  • Minimal dependencies

  • Work with arbitrary Zarr store types

  • Lazy, parallel, and web ready – no local filesystem required

  • Process extremely large datasets

  • Multiple downscaling methods

  • Supports Python>=3.8

  • Implements version 0.4 of the OME-Zarr NGFF specification

Installation¶

pip install 'ngff-zarr[cli]'

Pyodide REPL or JupyterLite,

import micropip
await micropip.install('ngff-zarr')